Workflow
Quantification of protein levels from mass-spectrometry experiments
This workflow performs a quantification of proteins from (label-free) mass-spectrometry data. The final results are relative comparisons of protein levels across conditions to check for significant changes.
It uses components for the OpenMS plugin for compactness (green) and provides interactive configuration as well as exploration of the results using the R packages PTXQC, MSstats together with JavaScript nodes (blue).
External resources
Used extensions & nodes
Created with KNIME Analytics Platform version 4.4.1
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Generic Workflow Nodes for KNIME
Freie Universitaet Berlin, Universitaet Tuebingen, and the GenericWorkflowNodes Team
Version 1.0.0
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