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PubMed Network Analysis

PubMedNetwork Mining
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Jul 29, 2021 6:11 AM
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Prerequisites to run the workflow with other data than in the example: 1. Generate a suitable query on PubMed webpage (http://www.ncbi.nlm.nih.gov/pubmed) , e.g. (("nonalcoholic"[all fields] OR "non-alcoholic"[all fields] OR "non alcoholic"[all fields]) AND "steatohepatitis"[all fields]) OR (("fat"[all fields] OR "liver"[all fields] OR "hepatic"[all fields]) AND NASH[Title/Abstract]) 2. Download hits from PubMed webpage ("Sent to" > "File" > "Format CSV") as CSV file 3. The downloaded CSV file is input for the FileReader node (delimiter = ","; "allow short line"; "read column header") in this workflow.

External resources

  • PubMed
  • Network Mining
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Used extensions & nodes

Created with KNIME Analytics Platform version 4.1.0
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    KNIME CoreTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.0

    knime
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    KNIME Math Expression (JEP)Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.0

    knime
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    KNIME Network MiningTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.0

    knime
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    KNIME Quick FormsTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.0

    knime

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