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NodeNode / Visualizer

3D Viewer

Community Nodes CDK 3D
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View to display 3D depictions of molecular structures. The input table needs to contain a column containing either CDK or SDF values. The structures also need to have 3D coordinates attached. (Due to problems with the 3D generation in the CDK libraries the coordinates must be available in the input file, for instance must be contained in the SDF file.)

This node uses the JMol library as rendering engine.

Node details

Input ports
  1. Type: Table
    Molecular input
    Table to display

Extension

The 3D Viewer node is part of this extension:

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Related workflows & nodes

  1. Go to item
    GGP2105: 2Dto3D Chemical Structures
    Giribio Nyroindia 2d
    +1
    Merge multiple 2D/3D Mol/SDF file to 1 3D SDF 3D Convertor with CDK or MMFF Geometry Opti…
    nyroindia > Workshops by Girinath (@giribio) on CADD > GGP2105_2Dto3D

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