NodeAlignment Writer

Source

Write alignments to a file in FASTA and Maestro format. The output format is determined by the file extension.

Backend implementation

utilities/seqconvert
seqconvert is used to convert Maestro Alignment format into FASTA output (if necessary)
Input ports
  1. Alignments in Maestro format Type: Data
    Alignments in Maestro format
  1. Model building 1
    Model Building: Read an amino acid sequence, search for possible templates, look for relevant ones, build a homology mod…
    jcmozzic > Public > Schrodinger workflow examples > Protein > Model building > Model building 1
  2. Free nodes - Multiple Sequence Viewer
    Nodes Maestro
    Opens the Multiple Sequence Viewer panel to visualized sequences or edit an alignement. [Requires: Maestro]
    jcmozzic > Public > Recent request > _Nodes > Free nodes > 05_Multiple Sequence Viewer
  3. Node Readers and Writers
    Readers and Writers: Read and write structure files. Read a list of PDB files from a directory. [Version: 3.0.0] [Requir…
    jcmozzic > Public > Schrodinger workflow examples > _Nodes > Readers and Writers > Node Readers and Writers
  4. Multiple Sequence Viewer
    Nodes Maestro
    Opens the Multiple Sequence Viewer panel to visualize sequences or edit an alignement. [Requires: Maestro]
    jcmozzic > Public > Recent request > _Nodes > Multiple Sequence Viewer > Node MSV
  5. Node MSV
    Multiple Sequence Viewer: Open the Multiple Sequence Viewer panel to visualize sequences or edit an alignment. [Version:…
    jcmozzic > Public > Schrodinger workflow examples > _Nodes > Multiple Sequence Viewer > Node MSV
  6. Readers and Writers
    Nodes Maestro
    Read and write structure files. Read a list of PDB files from a directory. [Requires: Maestro] See also: - Docking - Gri…
    jcmozzic > Public > Recent request > _Nodes > Readers and Writers > Node Readers and Writers
  7. 05_Multiple Sequence Viewer
    Free nodes: Workflow examples using only free nodes: https://www.schrodinger.com/SchrodingerKNIMEFreeNodes Chemistry ext…
    jcmozzic > Public > Schrodinger workflow examples > _Nodes > Free nodes > 05_Multiple Sequence Viewer