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NodeAlignment Writer

Source

Write alignments to a file in FASTA and Maestro format. The output format is determined by the file extension.

Backend implementation

utilities/seqconvert
seqconvert is used to convert Maestro Alignment format into FASTA output (if necessary)
Input ports
  1. Alignments in Maestro format Type: Data
    Alignments in Maestro format
  1. Model building 1
    Model Building: Read an amino acid sequence, search for possible templates, look for relevant ones, build a homology mod…
    jcmozzic > Public > Schrodinger workflow examples > Protein > Model building > Model building 1
  2. Free nodes - Multiple Sequence Viewer
    Nodes Maestro
    Opens the Multiple Sequence Viewer panel to visualized sequences or edit an alignement. [Requires: Maestro]
    jcmozzic > Public > Recent request > _Nodes > Free nodes > 05_Multiple Sequence Viewer
  3. Node Readers and Writers
    Readers and Writers: Read and write structure files. Read a list of PDB files from a directory. [Version: 3.0.0] [Requir…
    jcmozzic > Public > Schrodinger workflow examples > _Nodes > Readers and Writers > Node Readers and Writers
  4. Multiple Sequence Viewer
    Nodes Maestro
    Opens the Multiple Sequence Viewer panel to visualize sequences or edit an alignement. [Requires: Maestro]
    jcmozzic > Public > Recent request > _Nodes > Multiple Sequence Viewer > Node MSV
  5. Node MSV
    Multiple Sequence Viewer: Open the Multiple Sequence Viewer panel to visualize sequences or edit an alignment. [Version:…
    jcmozzic > Public > Schrodinger workflow examples > _Nodes > Multiple Sequence Viewer > Node MSV
  6. Readers and Writers
    Nodes Maestro
    Read and write structure files. Read a list of PDB files from a directory. [Requires: Maestro] See also: - Docking - Gri…
    jcmozzic > Public > Recent request > _Nodes > Readers and Writers > Node Readers and Writers
  7. 05_Multiple Sequence Viewer
    Free nodes: Workflow examples using only free nodes: https://www.schrodinger.com/SchrodingerKNIMEFreeNodes Chemistry ext…
    jcmozzic > Public > Schrodinger workflow examples > _Nodes > Free nodes > 05_Multiple Sequence Viewer
Add to KNIME Analytics Platform

Drag node into the workbench of KNIME Analytics Platform 4.x

Extension

This node is part of the extension

Schrödinger Extensions for KNIMETrusted extension
Version 19.3.13
Short link

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