NodeAlignment Writer

Source

Write alignments to a file in FASTA and Maestro format. The output format is determined by the file extension.

Backend implementation

utilities/seqconvert
seqconvert is used to convert Maestro Alignment format into FASTA output (if necessary)
Input ports
  1. Alignments in Maestro format Type: Data
    Alignments in Maestro format
  1. Readers and Writers
    Nodes Maestro
    Read and write structure files. Read a list of PDB files from a directory. [Requires: Maestro] See also: - Docking - Gr…
    schroedinger > Public > Schrodinger_workflow_examples > _Nodes > Readers and Writers > Readers and Writers
  2. Protein Model Building
    Read an amino acid sequence, search for possible templates, look for relevant ones, build a homology model including th…
    jcmozzic > Public > Schrodinger workflow examples > Protein > Model building > Model building 1
  3. Protein Model Building
    Prime
    Read an amino acid sequence, search for possible templates, look for relevant ones, build a homology model including th…
    schroedinger > Public > Schrodinger_workflow_examples > Protein > Model building > Model building 1
  4. Multiple Sequence Viewer
    Nodes Maestro
    Opens the Multiple Sequence Viewer panel to visualize sequences or edit an alignement. [Requires: Maestro]
    schroedinger > Public > Schrodinger_workflow_examples > _Nodes > Multiple Sequence Viewer > Multiple Sequence Viewer
  5. Readers and Writers
    Nodes Maestro
    Read and write structure files. Read a list of PDB files from a directory. [Requires: Maestro] See also: - Docking - Gr…
    jcmozzic > Public > Schrodinger workflow examples > _Nodes > Readers and Writers > Readers and Writers
  6. Readers and Writers
    Nodes Maestro
    Read and write structure files. Read a list of PDB files from a directory. [Requires: Maestro] See also: - Docking - Gr…
    schroedinger > Public > Schrodinger_workflow_examples > _Nodes > Readers and Writers > Readers and Writers
  7. Multiple Sequence Viewer
    Nodes Maestro
    Opens the Multiple Sequence Viewer panel to visualize sequences or edit an alignement. [Requires: Maestro]
    schroedinger > Public > Schrodinger_workflow_examples > _Nodes > Multiple Sequence Viewer > Multiple Sequence Viewer
  8. Protein Model Building
    Read an amino acid sequence, search for possible templates, look for relevant ones, build a homology model including th…
    schroedinger > Public > Schrodinger_workflow_examples > Protein > Model building > Model building 1
  9. Multiple Sequence Viewer
    Nodes Maestro
    Opens the Multiple Sequence Viewer panel to visualize sequences or edit an alignement. [Requires: Maestro]
    jcmozzic > Public > Schrodinger workflow examples > _Nodes > Multiple Sequence Viewer > Multiple Sequence Viewer