NodeNode / Source

Document Grabber

Downloads document from a certain database which can be specified in the dialog, i.e.: PubMed. After sending the specified query to the database and downloading the resulting documents, the documents will be parsed and deleted if it is specified in the dialog.

Output ports
  1. Documents output table Type: Data
    An output table which contains the parsed document data.
  1. KU_TEST_01
    supernova22c > Public > KU_TEST_01
  2. Creating a Corpus
    parsing WHO Document Grabber +1
    This workflow parses the drug list and descriptions from the WHO website and creates a corpus by using the Document Gra…
    b_eslami > Public > 02_Chemistry_and_Life_Sciences > 04_Prediction_Of_Drug_Purpose > 01_Creating_A_Corpus
  3. Fun with Tags
    Automated access to disease information is an important goal of information extraction and text mining efforts. Here, w…
    b_eslami > Public > 02_Chemistry_and_Life_Sciences > 03_Fun_with_Tags
  4. Fun with Tags
    biology
    Automated access to disease information is an important goal of information extraction and text mining efforts. Here, w…
    b_eslami > Public > 02_Chemistry_and_Life_Sciences > 02_Fetch_And_Transform_PubChem_Data > 03_Fun_with_Tags
  5. Topic Modeling on Biomedical Literature
    Topic modeling PubMed LDA +1
    This workflow shows a topic modeling approach using documents related to user-selected diseases of interest. It starts,…
    knime > Life Sciences > Events > 2020_04_28_Topic_Modeling_Webinar > TopicModeling_on_Biomedical_Literature
  6. Tagging Genes in Disease Related Publications
    Life Sciences Ontologies RDF +4
    This example workflow shows how ontology terms can be used to tag biomedical literature. In the first step, the Triple …
    knime > Life Sciences > Text_Processing > Document_Tagging_Using_Ontology_Terms
  7. Disease Genes
    biology disease genes +10
    This workflow highlights the functionality of KNIME for exploring, analyzing, and visualizing life science data related…
    knime > Examples > 03_Visualization > 02_JavaScript > 10_Disease_Genes
  8. Fun with Tags
    biology
    Automated access to disease information is an important goal of information extraction and text mining efforts. Here, w…
    knime > Examples > 08_Other_Analytics_Types > 02_Chemistry_and_Life_Sciences > 02_Fetch_And_Transform_PubChem_Data > 03_Fun_with_Tags
  9. Tagging of Disease Names in Biomedical Literature
    Text mining Network mining
    Automated access to disease information is an important goal of information extraction and text mining efforts. Here, w…
    knime > Examples > 08_Other_Analytics_Types > 02_Chemistry_and_Life_Sciences > 03_Fun_with_Tags
  10. article_grabber_pubmed
    peleitor > Public > article_grabber_latest > article_grabber_pubmed