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Abner Tagger

Other Data TypesText ProcessingEnrichmentStreamable
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This node recognizes biomedical named entities, such as genes, proteins or cells and assigns tags to the corresponding terms like "PROTEIN", "RNA", "DNA", "CELL LINE" or "CELL TYPE". Furthermore it can be specified that found named entities are marked as unmodifiable, meaning that they are not going to be modified by any node afterwards. As underlying named entity recognition software ABNER (A Biomedical named entity recognizer) was used. For more details see: http://pages.cs.wisc.edu/~bsettles/abner/.

Node details

Input ports
  1. Type: Table
    Documents input table
    The input table containing the documents to tag.
Output ports
  1. Type: Table
    Documents output table
    An output table containing the tagged documents.

Extension

The Abner Tagger node is part of this extension:

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Related workflows & nodes

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