Source

Reads files such as the fastqc_data.txt file. Sections are stored in cells.

In general the file format consists of the following parts:

1. comment lines (that can include the version of the tool that created the file) starts with "##" and is one line long
2. Sections that can be regarded as individual tables starts with ">>" and ends with ">>END_MODULE" the first lines contains the name of the table, and an optional tab character followed by addition information (e.g. pass/fail)
3. within a section the column header are identified by a line that starts with "#". Each column header is separated by a tab character
4. Any other line within the Section follows the structure defined by the column header line. Values are tab separated
Example:
```##FastQC	0.10.1
>>Basic Statistics	pass
#Measure	Value
Filename	s_1.mm9_unaligned.txt
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23594500
Filtered Sequences	0
Sequence length	25-51
%GC	54
>>END_MODULE
```

### Output Ports

1. Type: Data Information from FASTQC file

## Find here

Community Nodes > NGS > IO

Make sure to have this extension installed:

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