OpenSwathAnalyzer

Manipulator

Picks peaks and finds features in an SWATH-MS or SRM experiment.

Web Documentation for OpenSwathAnalyzer

Input Ports

  1. Type: URI Object input file containing the chromatograms. [mzML]
  2. Type: URI Object transition file [TraML]
  3. Type: URI Object RT normalization file (how to map the RTs of this run to the ones stored in the library) [trafoXML,opt.]
  4. Type: URI Object [applies only if you have full MS2 spectra maps] Swath files that were used to extract the transitions. If present, SWATH specific scoring will be used. [mzML,opt.]

Output Ports

  1. Type: URI Object output file [featureXML]

Find here

Community Nodes > OpenMS > Targeted Experiments

Make sure to have this extension installed:

OpenMS

Update site for KNIME Analytics Platform 3.7:
KNIME Community Contributions (3.7)

How to install extensions