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OpenSwathAnalyzer

Community NodesOpenMSTargeted Experiments and OpenSWATH
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Picks peaks and finds features in an SWATH-MS or SRM experiment.

Web Documentation for OpenSwathAnalyzer

Node details

Input ports
  1. Type: URI Object
    in [mzML]
    input file containing the chromatograms. [mzML]
  2. Type: URI Object
    tr [traML]
    transition file [traML]
  3. Type: URI Object
    rt_norm [trafoXML]
    RT normalization file (how to map the RTs of this run to the ones stored in the library) [trafoXML,opt.]
  4. Type: URI Object
    swath_files [mzML]
    [applies only if you have full MS2 spectra maps] Swath files that were used to extract the transitions. If present, SWATH specific scoring will be used. [mzML,opt.]
Output ports
  1. Type: URI Object
    out [featureXML]
    output file [featureXML]

Extension

The OpenSwathAnalyzer node is part of this extension:

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