NodeOpenSwathAnalyzer

Manipulator

Picks peaks and finds features in an SWATH-MS or SRM experiment.

Web Documentation for OpenSwathAnalyzer

Input Ports

  1. Port Type: URI Object
    input file containing the chromatograms. [mzML]
  2. Port Type: URI Object
    transition file [TraML]
  3. Port Type: URI Object
    RT normalization file (how to map the RTs of this run to the ones stored in the library) [trafoXML,opt.]
  4. Port Type: URI Object
    [applies only if you have full MS2 spectra maps] Swath files that were used to extract the transitions. If present, SWATH specific scoring will be used. [mzML,opt.]

Output Ports

  1. Port Type: URI Object
    output file [featureXML]