- Type: TablePort 1Input table containing an ID column. If you only want to paste IDs in the configuration, connect an empty table as input. The maximum is 1000 IDs.
The Component uses IDs from several data sources to create an interactive pathway analysis based on the web service of Reactome. The input for the pathway enrichment analysis can either be a column that can be selected from the input table or IDs that can be inserted directly in the component configuration. If you use an input column and additionally paste IDs in the cofiguration window, the two input columns will be concatenated. Allowed identifier types are for example: UniProt identifiers: P30304 ChEBI identifiers: 15422 COMPOUND identifiers: C00002 Gene Ontology (GO) acession numbers: GO:0030060 Enzyme Classification (EC) numbers: 220.127.116.11 NCBI Gene: 4171 Protein Data Bank (PDB) identifiers: 1cbs Ensembl identifiers: ENSG00000141736 For more information about available identifiers visit: https://reactome.org/linking-to-us In the final view it is possible to select pathways in the bar chart and have it displayed in a table view. The selected pathways, associated genes, IDs and p-values will then serve as output for the component. If nothing is selected all found results will serve as output. For more infos about Reactome visit: https://reactome.org/ https://www.ncbi.nlm.nih.gov/pubmed/28249561 https://www.ncbi.nlm.nih.gov/pubmed/29145629
Used extensions & nodes
Created with KNIME Analytics Platform version 4.1.3
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