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3D View of PDB structures

PDBCheminformatics3DLife Sciences
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Version1.0.0Latest, created on 
Oct 24, 2023 4:30 PM
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This workflow snippet demonstrates how to query PDB using the PDB nodes from the Vernalis extension and to visualized the results in 3D using the 3D Molecule Viewer component. If you combine the 3D Molecule Viewer component with a Table View node in a component, the two views interact and the selection from the Table view is displayed in the 3D Molecule Viewer. Required Extensions: - Vernalis KNIME Nodes

External resources

  • 3D Molecule Viewer Component
  • Vernalis KNIME Nodes Extension
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Used extensions & nodes

Created with KNIME Analytics Platform version 4.3.0 Note: Not all extensions may be displayed.
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    KNIME Base nodesTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.0

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    knime
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    KNIME JavaScript ViewsTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.0

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    knime
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    KNIME REST Client ExtensionTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.0

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    knime
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    Vernalis KNIME NodesTrusted extension

    Vernalis Research Ltd, Cambridge, UK

    Version 1.28.0

    vernalis

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