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DefineBounds

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Jul 11, 2022 9:45 AM
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This node is interactive wrapper for the UpdateBounds component. It allows selection of reactions and manual update of their bounds via **Table Editor**. Only reactions explicitly selected in the **Table Editor** will be updated in the model, so if you change bounds, but not select any reaction the model won't be updated. Reactions are connected to table rows by column selected as **Reaction ID** in the configuration dialog. In the case when the value in the **Reaction ID** column do not match any reaction in the model, that row will be omitted and no error or exception will be raised. If no reactions matches the table, model would be returned unchanged.

Component details

Input ports
  1. Type: Python
    model
    Cobra Model object from other FBA components
  2. Type: Table
    reactions
    table of reactions and their bounds
Output ports
  1. Type: Table
    reactions
    subset of selected reactions and their bounds
  2. Type: Python
    model
    Cobra Model object with updated bounds

Used extensions & nodes

Created with KNIME Analytics Platform version 4.5.2
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    Version 4.5.2

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    KNIME JavaScript ViewsTrusted extension

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    KNIME Python Integration

    KNIME AG, Zurich, Switzerland

    Version 4.5.2

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    KNIME Quick FormsTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.5.2

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This component does not have nodes, extensions, nested components and related workflows

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