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DefineMedium

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Jul 11, 2022 9:45 AM
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This node is interactive wrapper for the UpdateMedium component. It takes exchange reactions from the model and shows them in the **Table Editor**. User can choose which exchange reactions have to be included into the new medium definition and define new bounds for them interactively. Only reactions explicitly selected in the **Table Editor** will be included into new medium defininiton in the model, so if you change bounds, but not select any reaction the model won't be updated.

Component details

Input ports
  1. Type: Python
    model
    cobrapy Model object from other FBA components.
Output ports
  1. Type: Table
    medium
    Table with reactions and bounds selected as new medium definition.
  2. Type: Table
    exchange
    Table with all exchange reactions defined in the model
  3. Type: Python
    model
    cobrapy Model component with new media definition.

Used extensions & nodes

Created with KNIME Analytics Platform version 4.5.2
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    KNIME Base nodesTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.5.2

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    KNIME ExpressionsTrusted extension

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    Version 4.5.1

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    KNIME JavaScript ViewsTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.5.2

    knime
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    KNIME Math Expression (JEP)Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.5.0

    knime
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    KNIME Python Integration

    KNIME AG, Zurich, Switzerland

    Version 4.5.2

    knime
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    KNIME Quick FormsTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.5.2

    knime

This component does not have nodes, extensions, nested components and related workflows

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