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IDTextReader

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This node can be used to read the output of the TextExporter tool into a KNIME table. TextExporter, when applied to an idXML file, writes out information on the identified peptides, namely RT, m/z, score, rank, sequence, charge, amino acids before and after, the type of score (q-value, PEP, ...), a search identifier and the protein accesions. All these information will be parsed into a KNIME table.

Node details

Input ports
  1. Type: URI Object
    ID File
    Incoming text file created with the TextExporter node.
Output ports
  1. Type: Table
    ID Table
    Table containing the information on the identified peptides.

Extension

The IDTextReader node is part of this extension:

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Related workflows & nodes

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