DatabaseSuitability

Computes a suitability score for a database which was used for a peptide identification search. Also reports the quality of LC-MS spectra.

Web Documentation for DatabaseSuitability

Input ports

1. Type: URI Object
   in_id [idXML]
   Input idXML file from a peptide identification search with a combined database. PeptideIndexer is needed, FDR is forbidden. [idXML]
2. Type: URI Object
   in_spec [mzML]
   Input MzML file used for the peptide identification [mzML]
3. Type: URI Object
   in_novo [idXML]
   Input idXML file containing de novo peptides (unfiltered) [idXML]
4. Type: URI Object
   database [FASTA]
   Input FASTA file of the database in question [FASTA]
5. Type: URI Object
   novo_database [FASTA]
   Input deNovo sequences derived from MzML given in 'in_spec' concatenated to one FASTA entry [FASTA]

Output ports

1. Type: URI Object
   out [tsv]
   Optional tsv output containing database suitability information as well as spectral quality. [tsv]