DecoyDatabase

Creates combined target+decoy sequence database from forward sequence database.

Web Documentation for DecoyDatabase

Input ports

1. Type: URI Object
   in [fasta]
   Input FASTA file(s), each containing a database. It is recommended to include a contaminant database as well. [fasta]
2. Type: URI Object
   in_relevant_proteins [fasta]
   These are the relevant proteins, for which we seek neighbors [fasta,opt.]

Output ports

1. Type: URI Object
   out [fasta]
   Output FASTA file where the decoy database (target + decoy or only decoy, see 'only_decoy') will be written to. [fasta]
2. Type: URI Object
   out_neighbor []
   Output FASTA file with neighbors of relevant peptides (given in 'in_relevant_proteins'). []
3. Type: URI Object
   out_relevant []
   Output FASTA file with target+decoy of relevant peptides (given in 'in_relevant_proteins'). Required for downstream filtering of search results via IDFilter and subsequent FDR. []