NodeFeatureFinderIdentification

Manipulator

Detects features in MS1 data based on peptide identifications.

Web Documentation for FeatureFinderIdentification

Input ports

  1. in [mzML] Type: URI Object
    Input file: LC-MS raw data [mzML]
  2. id [idXML] Type: URI Object
    Input file: Peptide identifications derived directly from 'in' [idXML]
  3. id_ext [idXML] Type: URI Object
    Input file: 'External' peptide identifications (e.g. from aligned runs) [idXML,opt.]
  4. candidates_in [featureXML] Type: URI Object
    Input file: Feature candidates from a previous run. If set, only feature classification and elution model fitting are carried out, if enabled. Many parameters are ignored. [featureXML,opt.]

Output ports

  1. out [featureXML] Type: URI Object
    Output file: Features [featureXML]
  2. lib_out [traML,Inactive] Type: URI Object
    Output file: Assay library [traML,Inactive]
  3. chrom_out [mzML,Inactive] Type: URI Object
    Output file: Chromatograms [mzML,Inactive]
  4. candidates_out [featureXML,Inactive] Type: URI Object
    Optional output file with feature candidates. [featureXML,Inactive]
  5. xval_out [csv,Inactive] Type: URI Object
    Output file: SVM cross-validation (parameter optimization) results [csv,Inactive]