FeatureFinderMultiplex

Determination of peak ratios in LC-MS data

Web Documentation for FeatureFinderMultiplex

Input ports

1. Type: URI Object
   in [mzML]
   LC-MS dataset in either centroid or profile mode [mzML]

Output ports

1. Type: URI Object
   out [featureXML]
   Output file containing the individual peptide features. [featureXML]
2. Type: URI Object
   out_multiplets [consensusXML]
   Optional output file containing all detected peptide groups (i.e. peptide pairs or triplets or singlets or ..). The m/z-RT positions correspond to the lightest peptide in each group. [consensusXML]
3. Type: URI Object
   out_blacklist [mzML]
   Optional output file containing all peaks which have been associated with a peptide feature (and subsequently blacklisted). [mzML]