FileFilter

Manipulator

Extracts or manipulates portions of data from peak, feature or consensus-feature files.

Web Documentation for FileFilter

Input Ports

  1. Type: URI Object
    Input file [mzML,featureXML,consensusXML]
  2. Type: URI Object
    Input file containing MS2 spectra that should be retained or removed from the mzML file!#br#Matching tolerances are taken from 'spectra:blackorwhitelist:similarity_threshold|rt|mz' options.#br# [mzML,opt.]
  3. Type: URI Object
    Input file containing consensus features whose corresponding MS2 spectra should be removed from the mzML file!#br#Matching tolerances are taken from 'consensus:blackorwhitelist:rt' and 'consensus:blackorwhitelist:mz' options.#br#If consensus:blackorwhitelist:maps is specified, only these will be used.#br# [consensusXML,opt.]
  4. Type: URI Object
    Input file containing MS2 identifications whose corresponding MS2 spectra should be removed from the mzML file!#br#Matching tolerances are taken from 'id:rt' and 'id:mz' options.#br#This tool will require all IDs to be matched to an MS2 spectrum, and quit with error otherwise. Use 'id:blacklist_imperfect' to allow for mismatches. [idXML,opt.]

Output Ports

  1. Type: URI Object
    Output file [mzML,featureXML,consensusXML]

Extension

This node is part of the extension

OpenMS

v2.4.0

Short Link

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