NodeFileFilter

Manipulator

Extracts or manipulates portions of data from peak, feature or consensus-feature files.

Web Documentation for FileFilter

Input ports

  1. in [mzML,featureXML,consensusXML] Type: URI Object
    Input file [mzML,featureXML,consensusXML]
  2. file [mzML] Type: URI Object
    Input file containing MS2 spectra that should be retained or removed from the mzML file!#br#Matching tolerances are taken from 'spectra:blackorwhitelist:similarity_threshold|rt|mz' options.#br# [mzML,opt.]
  3. file [consensusXML] Type: URI Object
    Input file containing consensus features whose corresponding MS2 spectra should be removed from the mzML file!#br#Matching tolerances are taken from 'consensus:blackorwhitelist:rt' and 'consensus:blackorwhitelist:mz' options.#br#If consensus:blackorwhitelist:maps is specified, only these will be used.#br# [consensusXML,opt.]
  4. blacklist [idXML] Type: URI Object
    Input file containing MS2 identifications whose corresponding MS2 spectra should be removed from the mzML file!#br#Matching tolerances are taken from 'id:rt' and 'id:mz' options.#br#This tool will require all IDs to be matched to an MS2 spectrum, and quit with error otherwise. Use 'id:blacklist_imperfect' to allow for mismatches. [idXML,opt.]

Output ports

  1. out [mzML,featureXML,consensusXML] Type: URI Object
    Output file [mzML,featureXML,consensusXML]