FileFilter

Extracts or manipulates portions of data from peak, feature or consensus-feature files.

Web Documentation for FileFilter

Input ports

1. Type: URI Object
   in [mzML,featureXML,consensusXML]
   Input file [mzML,featureXML,consensusXML]
2. Type: URI Object
   file [mzML]
   Input file containing MS2 spectra that should be retained or removed from the mzML file!#br#Matching tolerances are taken from 'spectra:blackorwhitelist:similarity_threshold|rt|mz' options.#br# [mzML,opt.]
3. Type: URI Object
   file [consensusXML]
   Input file containing consensus features whose corresponding MS2 spectra should be removed from the mzML file!#br#Matching tolerances are taken from 'consensus:blackorwhitelist:rt' and 'consensus:blackorwhitelist:mz' options.#br#If consensus:blackorwhitelist:maps is specified, only these will be used.#br# [consensusXML,opt.]
4. Type: URI Object
   blacklist [idXML]
   Input file containing MS2 identifications whose corresponding MS2 spectra should be removed from the mzML file!#br#Matching tolerances are taken from 'id:rt' and 'id:mz' options.#br#This tool will require all IDs to be matched to an MS2 spectrum, and quit with error otherwise. Use 'id:blacklist_imperfect' to allow for mismatches. [idXML,opt.]

Output ports

1. Type: URI Object
   out [mzML,featureXML,consensusXML]
   Output file [mzML,featureXML,consensusXML]