GNPSExport

Export representative consensus MS/MS scan per consensusElement into a .MGF file format.

See the documentation on https://ccms-ucsd.github.io/GNPSDocumentation/featurebasedmolecularnetworking-with-openms

Web Documentation for GNPSExport

Input ports

1. Type: URI Object
   in_cm [consensusXML]
   Input consensusXML file containing only consensusElements with "peptide" annotations. [consensusXML]
2. Type: URI Object
   in_mzml [mzML]
   Original mzml files containing the ms2 spectra (aka peptide annotation). #br#Must be in order that the consensusXML file maps the original mzML files. [mzML]

Output ports

1. Type: URI Object
   out [mgf]
   Output MGF file. [mgf]
2. Type: URI Object
   out_quantification [txt]
   Output feature quantification table. [txt]
3. Type: URI Object
   out_pairs [csv]
   Output supplementary pairs table for IIMN. [csv]
4. Type: URI Object
   out_meta_values [tsv]
   Output meta value file. [tsv]