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NodeNode / Manipulator

IDFileConverter

Community Nodes OpenMS ID Processing
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Converts identification engine file formats.

Web Documentation for IDFileConverter

Node details

Input ports
  1. Type: URI Object
    in [pepXML,protXML,mascotXML,omssaXML,xml,psms,tsv,idXML,mzid,xquest.xml,fasta]
    Input file or directory containing the data to convert. This may be:#br#- a single file in a multi-purpose XML format (.pepXML, .protXML, .idXML, .mzid),#br#- a single file in a search engine-specific format (Mascot: .mascotXML, OMSSA: .omssaXML, X! Tandem: .xml, Percolator: .psms, xQuest: .xquest.xml),#br#- a single file in fasta format (can only be used to generate a theoretical mzML),#br#- a single text file (tab separated) with one line for all peptide sequences matching a spectrum (top N hits),#br#- for Sequest results, a directory containing .out files.#br# [pepXML,protXML,mascotXML,omssaXML,xml,psms,tsv,idXML,mzid,xquest.xml,fasta]
  2. Type: URI Object
    mz_file [mzML,mzXML,mzData]
    [pepXML, Sequest, Mascot, X! Tandem, mzid, Percolator only] Retention times and native spectrum ids (spectrum_references) will be looked up in this file [mzML,mzXML,mzData,opt.]
Output ports
  1. Type: URI Object
    out [idXML,mzid,pepXML,FASTA,xquest.xml,mzML]
    Output file [idXML,mzid,pepXML,FASTA,xquest.xml,mzML]

Extension

The IDFileConverter node is part of this extension:

  1. Go to item

Related workflows & nodes

    1. Go to item
    2. Go to item
    3. Go to item
    4. Go to item
    5. Go to item
    6. Go to item

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