OpenPepXLLF

Protein-protein cross linking with label-free linkers.

Web Documentation for OpenPepXLLF

Input ports

1. Type: URI Object
   in [mzML]
   Input file containing the spectra. [mzML]
2. Type: URI Object
   database [fasta]
   Input file containing the protein database. [fasta]
3. Type: URI Object
   decoy_database [fasta]
   Input file containing the decoy protein database. Decoys can also be included in the normal database file instead (or additionally). [fasta,opt.]

Output ports

1. Type: URI Object
   out_idXML [idXML]
   Results in idXML format (at least one of these output parameters should be set, otherwise you will not have any results). [idXML]
2. Type: URI Object
   out_mzIdentML [mzid]
   Results in mzIdentML (.mzid) format (at least one of these output parameters should be set, otherwise you will not have any results) [mzid]
3. Type: URI Object
   out_xquestxml [xquest.xml]
   Results in the xquest.xml format (at least one of these output parameters should be set, otherwise you will not have any results). [xquest.xml]
4. Type: URI Object
   out_xquest_specxml [spec.xml]
   Matched spectra in the xQuest .spec.xml format for spectra visualization in the xQuest results manager. [spec.xml]