OpenSwathAssayGenerator

Generates assays according to different models for a specific TraML

Web Documentation for OpenSwathAssayGenerator

Input ports

1. Type: URI Object
   in [tsv,mrm,pqp,TraML]
   Input file [tsv,mrm,pqp,TraML]
2. Type: URI Object
   swath_windows_file [txt]
   Tab separated file containing the SWATH windows for exclusion of fragment ions falling into the precursor isolation window: lower_offset upper_offset \newline 400 425 \newline ... Note that the first line is a header and will be skipped. [txt,opt.]
3. Type: URI Object
   unimod_file [xml]
   (Modified) Unimod XML file (http://www.unimod.org/xml/unimod.xml) describing residue modifiability [xml,opt.]

Output ports

1. Type: URI Object
   out [tsv,pqp,TraML]
   Output file [tsv,pqp,TraML]