- Type: URI Objectin_id [idXML]Peptides with precursor information [idXML,opt.]
- Type: URI Objectin_text [txt]Peptides as text-based file [txt,opt.]
- Type: URI Objectin_oligo_params [paramXML]input file with additional model parameters when using the OLIGO kernel [paramXML,opt.]
- Type: URI Objectin_oligo_trainset [txt]input file with the used training dataset when using the OLIGO kernel [txt,opt.]
- Type: URI Objectsvm_model [txt]svm model in libsvm format (can be produced by RTModel) [txt]
Node / Manipulator
RTPredict
Node details
Input ports
Output ports
- Type: URI Objectfile [idXML]Output file with peptide RT prediction [idXML]
- Type: URI Objectpositive [idXML]Output file in idXML format containing positive predictions for peptide separation prediction - requires 'out_id:negative' to be present as well. [idXML]
- Type: URI Objectnegative [idXML]Output file in idXML format containing negative predictions for peptide separation prediction - requires 'out_id:positive' to be present as well. [idXML]
- Type: URI Objectfile [csv]Output file with predicted RT values [csv]
Extension
The RTPredict node is part of this extension:
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Related workflows & nodes
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