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MSMS Spectrum Viewer

Community NodesOpenMSVisualization
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A node for displaying annotated MS/MS spectra of peptides based on the Lorikeet.js library (https://uwpr.github.io/lorikeet/). An input table could be generated by joining outputs from peptide search engines of the OpenMS plugin and the corresponding spectra from the input mzML file by the spectrum reference. MzML files can be converted to a KNIME table by the FileToTable node.

Node details

Input ports
  1. Type: Table
    Input Data
    Data table containing the information for the sequence viewer. Check the config dialogue for the expected columns.

Extension

The MSMS Spectrum Viewer node is part of this extension:

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Related workflows & nodes

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