Phosphoproteomics_ID

Uses MSGFPlus and Percolator for peptide identification, Luciphor to identify phosphorylation sites on peptide sequences and then Epifany for protein inference.

Example input data:
To download the data from the archive, check the box on the folder and click on the download button (arrow) on the top left.
Download and unpack the "PhosphoID" data into a directory "Example_data/PhosphoID" next to this workflow inside your KNIME workspace.

External resources

• Example Data
• Home of the OpenMS plugin