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ProteomicsLFQ_tool_and_MSstats_postprocessing

OpenMS Mass spectrometry Protein identification Protein quantification MSstats
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Uses the ProteomicsLFQ that contains the standard proteomics LFQ pipeline, after peptide and protein identification. Applies post-processing with MSstats. Example input data: To download the data from the archive, check the box on the folder and click on the download button (arrow) on the top left. Download and unpack the "iPRG2015" data into a directory "Example_data/iPRG2015" next to this workflow inside your KNIME workspace.

External resources

  • Example Data
  • Home of the OpenMS plugin

Used extensions & nodes

Created with KNIME Analytics Platform version 4.7.1 Note: Not all extensions may be displayed.
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    Generic Workflow Nodes for KNIME

    Freie Universitaet Berlin, Universitaet Tuebingen, and the GenericWorkflowNodes Team

    Version 1.0.0

    gkn-team
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    KNIME Base nodes Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.7.1

    knime
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    KNIME Interactive R Statistics Integration Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.7.0

    knime
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    KNIME JavaScript Views Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.7.0

    knime
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    KNIME Javasnippet Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.7.0

    knime
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    OpenMS

    Versions 2.5.0, 2.7.0

    Openms Team profile image
    openms-team
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