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DIAMetAlyzer_2.0

OpenMSMass spectrometryMetabolomicsOpenSWATHSWATH
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Mar 18, 2018 2:41 PM
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Uses Decoy generation from DDA data, targeted DIA analysis using OpenSWATH and pyprophet for statistical validation. Example input data: To download the data from the archive linked below, check the box on the folder and click on the download button (arrow) on the top left. Download and unpack the "DIAMetAlyzer" data into a directory "Example_data/DIAMetAlyzer" inside your KNIME workspace.

External resources

  • Example Data
  • Home of the OpenMS plugin
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Used extensions & nodes

Created with KNIME Analytics Platform version 4.7.3 Note: Not all extensions may be displayed.
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    Generic Workflow Nodes for KNIMETrusted extension

    Freie Universitaet Berlin, Universitaet Tuebingen, and the GenericWorkflowNodes Team

    Version 1.1.0

    gkn-team
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    KNIME Base nodesTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.7.2

    knime
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    KNIME Python 2 Integration (legacy)

    KNIME AG, Zurich, Switzerland

    Version 4.7.1

    knime
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    KNIME Quick FormsTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.7.2

    knime
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    OpenMSTrusted extension

    Version 3.0.0

    openms-team profile image
    openms-team

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