Alignment Reader

Read alignment files in FASTA and Maestro format. The input format is determined by the file extension. Note that alignments are converted to Maestro format by default.

Backend implementation

$SCHRODINGER/utilities/seqconvert
seqconvert is used to convert FASTA input to Maestro Alignment format (if necessary)

Output ports

1. Type: Table
   Alignments in Maestro format
   Alignments in Maestro format