Desmond Trajectory Manipulation
Source
This node allows the user to copy, move (copy and delete original files) or delete Desmond Trajectories. If the input table contains more than one row of trajectories, they will all be subjected to the same manipulation function.
Input ports
- Type: Data Input data table containing Desmond Trajectory
Output ports
- Type: Data Trajectory format
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Desmond simulation
Molecular Dynamics Desmond Trajectory Snapshots Jobcontrol Distance Hydrogen Bond Atom SelectionPrepare a system and run a Desmond MD simulation. Individual frames are then extracted and analyzed in terms of hydroge…jcmozzic > Public > Schrodinger workflow examples > Molecular Dynamics > MD simulation > MD simulation 1 -
Ligand alignment MD refinement
Molecular DynamicsA Desmond molecular dynamics simulation is run on each ligand prealigned in the protein binding site. Then the represen…schroedinger > Public > Schrodinger_workflow_examples > Molecular Dynamics > Ligand alignment MD refinement > Ligand alignment MD refinement 2 -
Ligand alignment MD refinement
Molecular DynamicsA Desmond molecular dynamics simulation is run on each ligand prealigned in the protein binding site. Then the represen…schroedinger > Public > Schrodinger_workflow_examples > Molecular Dynamics > Ligand alignment MD refinement > Ligand alignment MD refinement 1 -
Ligand alignment MD refinement
Molecular DynamicsA Desmond molecular dynamics simulation is run on each ligand prealigned in the protein binding site. Then the represen…jcmozzic > Public > Schrodinger workflow examples > Molecular Dynamics > Ligand alignment MD refinement > Ligand alignment MD refinement 2 -
Ligand alignment MD refinement
Molecular DynamicsA Desmond molecular dynamics simulation is run on each ligand prealigned in the protein binding site. Then the represen…schroedinger > Public > Recent_requests > 2020-2 > Molecular Dynamics > Ligand alignment MD refinement > Ligand alignment MD refinement 2 -
Desmond simulation
Molecular Dynamics Desmond Trajectory Snapshots Jobcontrol Distance Hydrogen Bond Atom SelectionPrepare a system and run a Desmond MD simulation. Individual frames are then extracted and analyzed in terms of hydroge…schroedinger > Public > Schrodinger_workflow_examples > Molecular Dynamics > MD simulation > MD simulation 1-2 -
Desmond simulation
Molecular Dynamics Desmond Trajectory Snapshots Jobcontrol Distance Hydrogen Bond Atom SelectionPrepare a system and run a Desmond MD simulation. Individual frames are then extracted and analyzed in terms of hydroge…schroedinger > Public > Schrodinger_workflow_examples > Molecular Dynamics > MD simulation > MD simulation 1 -
Desmond simulation
Molecular Dynamics Desmond Trajectory Snapshots Jobcontrol Distance Hydrogen Bond Atom SelectionPrepare a system and run a Desmond MD simulation. Individual frames are then extracted and analyzed in terms of hydroge…schroedinger > Public > Schrodinger_workflow_examples > Molecular Dynamics > MD simulation > MD simulation 1-2 -
Desmond simulation
Molecular Dynamcis Desmond Trajectory Snapshots Jobcontrol Distance Hydrogen Bond Atom SelectionPrepare a system and run a Desmond MD simulation. Individual frames are then extracted and analyzed in terms of hydroge…schroedinger > Public > Schrodinger_workflow_examples > Molecular Dynamics > MD simulation > MD simulation 1-3 -
Ligand alignment MD refinement
Molecular DynamicsA Desmond molecular dynamics simulation is run on each ligand prealigned in the protein binding site. Then the represen…jcmozzic > Public > Schrodinger workflow examples > Molecular Dynamics > Ligand alignment MD refinement > Ligand alignment MD refinement 1
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