Alf
Manipulator
Compute pairwise similarity of sequences using alignment-free methods in IN.FASTA and write out tab-delimited matrix with pairwise scores to OUT.TXT.
Input ports
- Type: URI Object Name of the multi-FASTA input file. [fq,fastq,fa,fasta,faa,ffn,fna,frn,embl,gbk,raw,sam]
Output ports
- Type: URI Object Name of the file to which the tab-delimtied matrix with pairwise scores will be written to. Default is to write to stdout. [alf.tsv]
- Type: URI Object Print k-mer weights for every sequence to this file if given. [txt]