NodeNode / Manipulator

Alf

Compute pairwise similarity of sequences using alignment-free methods in IN.FASTA and write out tab-delimited matrix with pairwise scores to OUT.TXT.

Web Documentation for Alf

Input ports
  1. input-file [fq,fastq,fa,fasta,faa,ffn,fna,frn,embl,gbk,raw,sam] Type: URI Object
    Name of the multi-FASTA input file. [fq,fastq,fa,fasta,faa,ffn,fna,frn,embl,gbk,raw,sam]
Output ports
  1. output-file [alf.tsv] Type: URI Object
    Name of the file to which the tab-delimtied matrix with pairwise scores will be written to. Default is to write to stdout. [alf.tsv]
  2. k-mer-weights-file [txt] Type: URI Object
    Print k-mer weights for every sequence to this file if given. [txt]

This node is not contained in any workflows on the KNIME Hub, and not related to any outgoing nodes.