Alf

Compute pairwise similarity of sequences using alignment-free methods in IN.FASTA and write out tab-delimited matrix with pairwise scores to OUT.TXT.

Web Documentation for Alf

Input ports

1. Type: URI Object
   input-file [fq,fastq,fa,fasta,faa,ffn,fna,frn,embl,gbk,raw,sam]
   Name of the multi-FASTA input file. [fq,fastq,fa,fasta,faa,ffn,fna,frn,embl,gbk,raw,sam]

Output ports

1. Type: URI Object
   output-file [alf.tsv]
   Name of the file to which the tab-delimtied matrix with pairwise scores will be written to. Default is to write to stdout. [alf.tsv]
2. Type: URI Object
   k-mer-weights-file [txt]
   Print k-mer weights for every sequence to this file if given. [txt]