Calculated consecutive regions of coverage from alignment file IN.bam and write regions of interst to file OUT.roi. Counting is performed over the entire region (including intron and N-regions) based on the CIGAR string of the alignment record.

Web Documentation for Bam2roi

Input Ports

  1. Port Type: URI Object
    SAM/BAM formatted file. Must be sorted by coordinate. [bam,sam,sam.bgzf,sam.gz]

Output Ports

  1. Port Type: URI Object
    Output file with regions of interest. [roi,roi.bgzf,roi.gz]