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Bam2roi

Community NodesSeqAnNGS ROI Analysis
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Calculated consecutive regions of coverage from alignment file IN.bam and write regions of interst to file OUT.roi. Counting is performed over the entire region (including intron and N-regions) based on the CIGAR string of the alignment record.

Web Documentation for Bam2roi

Node details

Input ports
  1. Type: URI Object
    input-file [bam,sam,sam.bgzf,sam.gz]
    SAM/BAM formatted file. Must be sorted by coordinate. [bam,sam,sam.bgzf,sam.gz]
Output ports
  1. Type: URI Object
    output-file [roi,roi.bgzf,roi.gz]
    Output file with regions of interest. [roi,roi.bgzf,roi.gz]

Extension

The Bam2roi node is part of this extension:

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