MicroRazers
Manipulator
MicroRazerS uses a prefix-based mapping strategy to map small RNA reads possibly containing 3' adapter sequence.
Input to MicroRazerS is a reference genome file and a file with single-end reads. Use - to read the reads from stdin.
(c) Copyright 2009 by Anne-Katrin Emde.
Input ports
- Type: URI Object A reference genome file. [fq,fastq,fa,fasta,faa,ffn,fna,frn,embl,gbk,raw,sam]
- Type: URI Object Either one (single-end) or two (paired-end) read files. [fq,fastq,fa,fasta,faa,ffn,fna,frn,embl,gbk,raw,sam]
Output ports
- Type: URI Object Change output filename. (use - to dump to stdout in razers format) Default: <READS FILE>.razers. [razers,sam]