MicroRazers

MicroRazerS uses a prefix-based mapping strategy to map small RNA reads possibly containing 3' adapter sequence.

Input to MicroRazerS is a reference genome file and a file with single-end reads. Use - to read the reads from stdin.

(c) Copyright 2009 by Anne-Katrin Emde.

Web Documentation for MicroRazers

Input ports

1. Type: URI Object
   argument-0 [fq,fastq,fa,fasta,faa,ffn,fna,frn,embl,gbk,raw,sam]
   A reference genome file. [fq,fastq,fa,fasta,faa,ffn,fna,frn,embl,gbk,raw,sam]
2. Type: URI Object
   argument-1 [fq,fastq,fa,fasta,faa,ffn,fna,frn,embl,gbk,raw,sam]
   Either one (single-end) or two (paired-end) read files. [fq,fastq,fa,fasta,faa,ffn,fna,frn,embl,gbk,raw,sam]

Output ports

1. Type: URI Object
   output [razers,sam]
   Change output filename. (use - to dump to stdout in razers format) Default: <READS FILE>.razers. [razers,sam]