SnpStore

SNP and Indel Calling in Mapped Read Data.

Web Documentation for SnpStore

Input ports

1. Type: URI Object
   argument-0 [fa,fasta]
   A reference genome file. [fa,fasta]
2. Type: URI Object
   argument-1 [bam,sam,sam.bgzf,sam.gz,gff]
   Read alignment file(s) sorted by genomic position. [bam,sam,sam.bgzf,sam.gz,gff]

Output ports

1. Type: URI Object
   output [vcf]
   SNP output file (mandatory). [vcf]
2. Type: URI Object
   indel-file [gff]
   Output file for called indels in gff format. Default: off. [gff]