Read correction node for the GASiC approach. The node takes a normalized read count vector and a similarity matrix for the genomes and computes a corrected abundance vector for the given species.

Input Ports

  1. Type: Data
    Table containing for each read the information to which genomes it maps.
  2. Type: Data
    Table containing for simulated reads from which genome they were simulated and to which genomes they map.

Output Ports

  1. Type: Data
    Corrected abundance values.


This node is part of the extension

GASiC Nodes for KNIME


Short Link

Drag node into KNIME Analytics Platform