BowtieAlignerPE

bowtie

Web Documentation for BowtieAlignerPE

Input ports

1. Type: URI Object
   argument-1 [ebwt]
   Input Bowtie index. [ebwt]
2. Type: URI Object
   left_reads [fasta,fa,fastq,fq]
   Left reads files. [fasta,fa,fastq,fq]
3. Type: URI Object
   right_reads [fasta,fa,fastq,fq]
   Right reads file. [fasta,fa,fastq,fq]

Output ports

1. Type: URI Object
   argument-0 [sam]
   Output SAM File. [sam]
2. Type: URI Object
   sam_out [sam]
   Output SAM file. [sam]