SamtoolsMPileup

samtools mpileup | bcftools -bvcg

Web Documentation for SamtoolsMPileup

Input ports

1. Type: URI Object
   argument-1 [bam]
   Input BAM file. [bam]
2. Type: URI Object
   reference_file [fasta,fa]
   Input Reference file. [fasta,fa,opt.]

Output ports

1. Type: URI Object
   argument-0 [bcf]
   Output BCF file. [bcf]