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StarDist 2D

stelfrich profile image
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Mar 9, 2021 7:47 AM
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This component uses StarDist for segmentation of convex-shaped objects. It uses a slightly customized version of the ImageJ(2) plugin available at https://github.com/stardist/stardist-imagej. If you are using this component, please see https://github.com/stardist/stardist for how to cite the original publications. IMPORTANT: Read https://forum.image.sc/t/stardist-or-noise2voide-from-knime/39117/4 for installation instructions.

Component details

Input ports
  1. Type: Table
    Input
    A table that contains an image for segmentation
Output ports
  1. Type: Table
    Segmentation
    A table that contains two columns: The originally selected column and the StarDist segmentation

Used extensions & nodes

Created with KNIME Analytics Platform version 4.3.1
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    KNIME Base nodesTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.1

    knime
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    KNIME Deep Learning - TensorFlow IntegrationTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.0

    knime
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    KNIME Image ProcessingTrusted extension

    University of Konstanz / KNIME

    Version 1.8.3

    bioml-konstanz
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    KNIME Image Processing - ImageJ Integration (Beta)

    KNIME / LOCI

    Version 0.11.7

    bioml-konstanz
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    KNIME JavasnippetTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.0

    knime
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    KNIME Math Expression (JEP)Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.0

    knime
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    KNIME Quick FormsTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.1

    knime

This component does not have nodes, extensions, nested components and related workflows

Legal

By using or downloading the component, you agree to our terms and conditions.

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