Load FASTA Files

Each FASTA is loaded and parsed such that one output row of the table contains the data for 1 sequence in the file. The node attempts to parse the header block according to the standard options supplied, as indicated:

• GenBank >gi|{gi-number}|gb|{accession}|{locus}
• EMBL Data Library >gi|{gi-number}|emb|{accession}|{locus}
• DDBJ, DNA Database of Japan >gi|{gi-number}|dbj|{accession}|{locus}
• NBRF PIR >pir||{entry}
• Protein Research Foundation >prf||{name}
• SWISS-PROT >sp|{accession}|{name} or >tr|{accession}|{name}
• PDB >{PDB ID}:{chain}|PDBID|CHAIN|SEQUENCE
• Patents >pat|{country}|{number}
• GenInfo Backbone Id >bbs|{number}
• General database identifier >gnl|{database}|{identifier}
• NCBI Reference Sequence >ref|{accession}|{locus}
• Local Sequence identifier >lcl|{identifier}
• Other (No properties extracted)

This node was developed by Vernalis Research . For feedback and more information, please contact [e-mail]

Input ports

1. Type: Flow Variable
   Flow variables
   Optional flow variables containing file path(s)

Output ports

1. Type: Table
   FASTA Sequences
   Parsed content of the loaded files