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SMARTSViewer

Community NodesVernalisMiscellaneousStreamable
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Provides a SMARTSviewer visualisation of a column of SMARTs strings using the service provided by the University of Hamburg. The node performs no validation of the SMARTs strings prior to sending to the webservice. For more detailed information about the implementation see either the Help file at http://smartsview.zbh.uni-hamburg.de/smartsview/view or the following reference:
K. Schomburg, H.-C. Ehrlich, K. Stierand, M.Rarey; From Structure Diagrams to Visual Chemical Patterns , J. Chem. Inf. Model. , 2010, 50 , pp 1529-1535

The Communication Error Settings tab allows setting of behaviour relating to server communication problem handling. The values set are applied to each row in turn. The server will only be contacted until a successful result is returned. The settings allow the user to control the behaviour of the node should the SMARTSviewer server be functioning incorrectly. Note that it is not currently possible to cancel execution during a row, so use long delay settings with care!

Note that SMARTs strings are transferred to the remote server unencrypted, and the the server maintains an anonymous record of query SMARTs strings to aid future development.

This node was developed by Vernalis (Cambridge, UK) . For feedback and more information, please contact knime@vernalis.com

Node details

Input ports
  1. Type: Table
    In port 0
    Input port containing a column of SMARTS strings, either as String, SMARTS or Smiles format
Output ports
  1. Type: Table
    Appended SMARTSViewer Renderings
    The input table with the SMARTSViewer representations appended as a PNG column

Extension

The SMARTSViewer node is part of this extension:

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Related workflows & nodes

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