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TeachOpenCADD Workflow 8: Data acquisition from PDB

PDB Web service query Data filtering
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The PDB database holds 3D structural data and meta information on experimentally resolved proteins. This workflow shows how structural data can be automatically fetched from the PDB and processed.

Used extensions & nodes

Created with KNIME Analytics Platform version 4.5.0 Note: Not all extensions may be displayed.
  • KNIME Expressions Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.5.1

    knime
  • KNIME Javasnippet Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.5.0

    knime
  • KNIME JSON-Processing Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.5.0

    knime
  • KNIME REST Client Extension Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.5.0

    knime
  • Vernalis KNIME Nodes Trusted extension

    Vernalis Research Ltd, Cambridge, UK

    Version 1.31.0

    vernalis
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