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CHEESE-Search-API

CHEESEDeep MedChemCHEESE SearchAPIMolecular similarity search
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Versionv0.3.5Latest, created on 
Jan 22, 2026 9:45 AM
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The CHEESE Search API enables seamless integration of CHEESE's molecular search capabilities into your workflows. It allows for rapid, ligand-based similarity searches across extensive molecular databases, supporting various similarity metrics such as 2D fingerprints, 3D shape, and 3D electrostatic properties. Registered users can access the API by obtaining an API key from the CHEESE Search webpage. Detailed documentation and usage examples are available to assist in implementation.

Component details

Input ports
  1. Type: Table
    Port 1
    Input table with a column 'search_input' that contains SMILES code of the query molecule.
Output ports
  1. Type: Table
    Port 1
    Output table which contains the retrieved molecules and additional attributes.

External resources

  • CHEESE Search API Documentation
  • The CHEESE Search UI - public version
  • Deep MedChem webpage
  • CHEESE Search Tutorials

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Created with KNIME Analytics Platform version 5.2.6
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This component does not have nodes, extensions, nested components and related workflows

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