Hub
Pricing About
ComponentComponent

RefSeq ID Search GenBank Retrieval

longoka profile image
Draft Latest edits on 
Dec 1, 2019 9:31 PM
Drag & drop
Like
Use or download
This component performs an Efetch query and retrieves multiple GenBank file fields from a single RefSeq ID input. Fields include: queryid - user entered refseq ID URL - composited efetch URL accession - returned base refseq ID accession_version - refseq ID with version gene - official gene name gene_synonym - alternate gene name(s) organism - genus & species definition - basic description of molecule chr - chromosome chr_locus - chromosome & locus moltype - mRNA, lncRNA, etc length - number of sequence bases sequence - base string

Component details

Output ports
  1. Type: Table
    Port 1
    Table containing GenBank outputs.

Used extensions & nodes

Created with KNIME Analytics Platform version 4.0.2
  • Go to item
    KNIME CoreTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.0.2

    knime
  • Go to item
    KNIME Data GenerationTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.0.0

    knime
  • Go to item
    KNIME Quick FormsTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.0.2

    knime
  • Go to item
    KNIME XML-ProcessingTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.0.0

    knime
  • Go to item
    MMI Data Analytics Nodes

    MMI Agency

    Version 1.0.100

    mmiagency

This component does not have nodes, extensions, nested components and related workflows

Legal

By using or downloading the component, you agree to our terms and conditions.

KNIME
Open for Innovation

KNIME AG
Talacker 50
8001 Zurich, Switzerland
  • Software
  • Getting started
  • Documentation
  • Courses + Certification
  • Solutions
  • KNIME Hub
  • KNIME Forum
  • Blog
  • Events
  • Partner
  • Developers
  • KNIME Home
  • Careers
  • Contact us
Download KNIME Analytics Platform Read more about KNIME Business Hub
© 2025 KNIME AG. All rights reserved.
  • Trademarks
  • Imprint
  • Privacy
  • Terms & Conditions
  • Data Processing Agreement
  • Credits