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Untargeted Metabolomics through accurate mass search in MS data

MetabolomicsOpenMSMass spectrometry
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May 21, 2022 10:21 PM
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This workflow performs a simple untargeted identification and quantification of metabolites from liquid chromatography mass spectrometry experiments (in mzML format). It uses an accurate mass search based on feature data to lookup compounds in a database. Exports and visualizations of quant. results are also shown. Input data is automatically downloaded via http from a public respository.

External resources

  • OpenMS homepage
  • Converted input data
  • Original data
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Used extensions & nodes

Created with KNIME Analytics Platform version 4.4.1
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    Generic Workflow Nodes for KNIMETrusted extension

    Freie Universitaet Berlin, Universitaet Tuebingen, and the GenericWorkflowNodes Team

    Version 1.0.0

    gkn-team
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    KNIME Base nodesTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.4.1

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    KNIME Basic File System ConnectorsTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.4.1

    knime
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    KNIME-CDK

    University Konstanz and EBI

    Version 1.5.600

    egonw
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    KNIME JavaScript ViewsTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.4.1

    knime
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    KNIME JavasnippetTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.4.1

    knime
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    KNIME Math Expression (JEP)Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.4.0

    knime
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    KNIME PlotlyTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.4.0

    knime
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    KNIME Python Integration

    KNIME AG, Zurich, Switzerland

    Version 4.4.1

    knime
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    KNIME Quick FormsTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.4.1

    knime
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    OpenMSTrusted extension

    Version 2.7.0

    openms-team profile image
    openms-team

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