This workflow performs a simple untargeted identification and quantification of metabolites from liquid chromatography mass spectrometry experiments (in mzML format).
It uses an accurate mass search based on feature data to lookup compounds in a database. Exports and visualizations of quant. results are also shown.
Input data is automatically downloaded via http from a public respository.
Workflow
Untargeted Metabolomics through accurate mass search in MS data
External resources
Used extensions & nodes
Created with KNIME Analytics Platform version 4.4.1
- Go to item
Generic Workflow Nodes for KNIME
Freie Universitaet Berlin, Universitaet Tuebingen, and the GenericWorkflowNodes Team
Version 1.0.0
Legal
By using or downloading the workflow, you agree to our terms and conditions.