Components

Last edited  Dec 3, 2024 9:13 PM

Excel Translator

Last edited  Aug 20, 2024 2:42 PM

Explore the ChEBI Ontology (converted to v5.2)

Original Workflow: https://hub.knime.com/knime/spaces/Examples/08_Other_Analytics_Types/02_Chemistry_and_Life_Sciences/05_ChEBI_ontology_explorer~F0erB7Sb3MmoGxDc/current-state

Last edited  Mar 19, 2024 4:42 PM

Exploring A Pizza Ontology with an OWL file (converted to v5.2)

Original workflow: https://hub.knime.com/knime/spaces/Examples/08_Other_Analytics_Types/06_Semantic_Web/12_Exploring-pizza-ontology-with-semantic-web~XYhcwbBj7In9hb70/current-state

Last edited  Mar 19, 2024 2:18 PM

FAIR data with KNIME (converted to v5.2)

Original Repo: https://hub.knime.com/knime/spaces/Life%20Sciences/Laboratory%20Data/FAIR%20data%20with%20KNIME~Py9va0SQesbauPwS/current-state Replaced all deprecated nodes, and fixed some bugs in the components

Last edited  Apr 3, 2024 7:23 PM

Gene Expression Analysis (converted to v5.2)

Original repository location here: https://hub.knime.com/knime/spaces/Examples/08_Other_Analytics_Types/02_Chemistry_and_Life_Sciences/07_Gene_Expression_Analysis~vUgr-iyGudXur-1B/current-state This workflow requires R to be installed on your local machine, follow this link to see how it can be done: https://docs.knime.com/latest/r_installation_guide/index.html#_introduction For the 'R Snippet" node to work, you need to go into R and install the library 'edgeR' : https://bioconductor.org/packages/release/bioc/html/edgeR.html For the last component in the workflow you will need to input your credentials to 'Google Authenticator' and you need to add a driver for 'Google BigQuery Connector' node. The link below details how this can be done: https://docs.knime.com/latest/db_extension_guide/index.html#register_jdbc Actual link to driver needed: https://cloud.google.com/bigquery/docs/reference/odbc-jdbc-drivers If using API key, you can follow this on how to get connected: https://www.knime.com/blog/tutorial-importing-data-from-google-bigquery

Last edited  Feb 29, 2024 4:43 PM

Generate ChEMBL Predictions (converted to v5.2 with data)

Original repository location here: https://hub.knime.com/knime/spaces/Life%20Sciences/Cheminformatics/ONNX~-N2OaupF0WlFkAZF/ This is a conversion of the original workflow to KNIME Analytics Platform v5.2 with the necessary Data included Python is needed on your local machine to run some of the legacy nodes follow the guide below: https://docs.knime.com/latest/python_installation_guide/index.html#_configure_the_ap_wide_environment Pathing for setting up Python with KNIME: - Under Preferences -> KNIME -> Conda; specify the folder - Under Preferences -> KNIME -> Python (legacy); Create a new enviroment and it will automatically download necessary dependencies

Last edited  Feb 22, 2024 8:39 PM

Generic Translations using OpenAI

Last edited  Nov 26, 2024 5:15 PM

Gut Microbiome Analysis of IBD Patients (16S) (Converted to v5.2)

Original repository: https://hub.knime.com/knime/spaces/Life%20Sciences/Bioinformatics/Microbiome_Analysis~O7Mx7ZakjXbft54O/current-state Additional packages needed for R: DADA2 You can use BiocManager::install('dada2') as using install.packages("dada2") will not work. How to get Bioc: https://www.bioconductor.org/install/

Last edited  Feb 29, 2024 7:49 PM

Model Selection with Integrated Deployment (converted to v5.2)

Original: https://hub.knime.com/knime/spaces/Life%20Sciences/Events/2020_10_Integrated_Deployment_In_Action_Webinar/Model%20Selection%20with%20Integrated%20Deployment~VxE7Y-PGz8jP6LaU/current-state This is a version converted to work v5.2 on KNIME Analytics Platform

Last edited  Feb 20, 2024 8:53 PM

NIR_Spectral_Data_Analysis (Converted to v5.2)

Original Repo: https://hub.knime.com/knime/spaces/Life%20Sciences/Laboratory%20Data/NIR_Spectral_Data_Analysis~tY7I5MbR1HUiwslO/

Last edited  Mar 26, 2024 10:41 PM

Predicting the Purpose of a Drug (converted to v5.2)

Original: https://hub.knime.com/knime/spaces/Examples/08_Other_Analytics_Types/02_Chemistry_and_Life_Sciences/04_Prediction_Of_Drug_Purpose~dtJrrbFiIi8qefWN/ Note -> In order for some nodes to work, you need to increase memory allocation to KNIME Analytics platform or you will run into a Java heap error.

Last edited  Mar 7, 2024 4:25 PM

Public

Last edited  Feb 1, 2024 7:58 PM

TeachOpenCADD (converted to v5.2)

Last edited  May 23, 2024 3:44 PM

Translations

Last edited  Jul 29, 2024 7:27 PM